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Hace 15 horas · Improvements to patric, the all-bacterial bioinformatics database and analysis resource center. ... A human gut bacterial genome and culture collection for improved metagenomic analyses.
Hace 2 días · In this study, virulence- and resistance-associated genes were compared in 14 genomic sequences of clinical and environmental isolates of P. aeruginosa using the VFDB, PATRIC, and CARD databases. All isolates were found to share 62% of virulence genes related to adhesion, motility, secretion systems, and quorum sensing and 72.9% of resistance genes related to efflux pumps and membrane ...
5 de may. de 2024 · Specifically, we considered the antimicrobial susceptibility testing phenotype annotation, sequence type (excluding plasmid-only sequences), contig number, genome length and PATRIC scores for genome quality, fine consistency, coarse consistency and completeness.
23 de may. de 2024 · Genome annotation is the process of identifying functional elements along the sequence of a genome. The Genome Annotation Service in BV-BRC uses the RAST tool kit (RASTtk) [1] to annotate genomic features in bacteria, the Viral Genome ORF Reader (VIGOR4) [2] to annotate viruses, and PHANOTATE [3,4] to annotate bacteriophages.
Hace 15 horas · As genomic and related data continue to expand, ... (2019) A machine learning-based service for estimating quality of genomes using PATRIC. BMC Bioinformatics 20(1):1–9. Article Google Scholar Nurk S et al (2017) metaSPAdes: a new versatile metagenomic assembler. Genome Res 27(5 ...
20 de may. de 2024 · We used the Pathosystems Resource Integration Center (PATRIC) genome database which contains 225,101 high-quality prokaryotic genomes representing 34,304 species as the reference for mapping the taxonomic information of zOTUs.
Hace 2 días · Genomic analysis in our study revealed the absence of virulence genes and the lack of acquired antibiotic resistance ... Boisvert S, Brettin T, Bun C et al. Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center. Nucleic Acids Res. 2016 [cited 2024 Jan 14];45:535–42. https://www.patricbrc ...
