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If you have compound lists represented by other types of format, you can use OpenBabel to transfer the format. By clicking on “Add one cluster”, BATMAN-TCM also supports users to simultaneously input multiple TCM formulas/herbs/Compound lists. Please click on “Example 4” to obtain an example (4 clusters maximum). 2. Parameters setting.
The proposal of BATMAN-TCM 2.0 has been submitted to Nucleic Acids Research 2024 database issue. Mar 12 th, 2023. The updated BATMAN-TCM 2.0 was online for test. Dec 1 st, 2022. The citation times of BATMAN-TCM reached 500. Sep 28 th, 2021. The paper of BATMAN-TCM was the highly cited paper in SCI. Nov 1 st, 2018.
Function2TCM - BATMAN. By Function2TCM, users can search TCM formulas/herbs significantly associated with a certain Gene Ontology (GO) term, KEGG pathway or TTD/OMIM disease term. This function is implemented based on BATMAN-TCM’s analysis results of TCMID formulas/herbs. Select Score_cutoff:
Download. Function2TCM. File Name. Description. Size. Known drug-target interaction data.txt. The integrated known drug-target interaction data are from DrugBank (version: 20150726), KEGG (version: July 31, 2014) and TTD (version: 4.3.02) 1.2 MB. tcmid_target_prediction_result.zip (Baidu netdisk password: w93k)
BATMAN-TCM is the first online bioinformatics analysis tool specially designed for the research of molecular mechanism of TCM, mainly based on TCM ingredients’ target prediction and the following network pharmacology analyses of the potential targets, aiming to contribute to the understanding of the “multi-component, multi-target and multi-pathway” combinational therapeutic mechanism of ...
Asked by Sally at 2014-12-31 17:20:55. In BATMAN-TCM, the query TCM formula/herb will be first transferred into a list of compositive compounds based on the formula-herb-ingredient association data collected and integrated by TCMID database, and then for each ingredient, candidate targets will be predicted based on our target prediction method ...
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31 de dic. de 2015 · Batman. The jobid in the URL you input seems incorrect. Please check and re-input! Contact: Zhongyang Liu, liuzy1984@163.com, Beijing Proteome Research Center, Beijing, China.
